Aarnio, A.N., Weinberger, A.J., Stassun, K.G., Mamajek, E.E., James, D.J.
A Survey for a Coeval, Comoving Group Associated with HD 141569, Astronomical Journa in press (2008)

J. R. Ahlbin, L. W. Massengill, O. A. Amusan, A. Balasubramanian, M. C. Casey, D. A. Black, R. A. Reed, B. L. Bhuva, J. D. Black, and M. W. McCurdy, C-CREST technique for combinational logic SET testing, Accepted for publication in IEEE Trans. Nucl. Sci.

Alexander, N.; Al-Mestarihi, A.; Bortolus, M.; McHaourab, H.; Meiler, J.
De Novo High-Resolution Protein Structure Determination from Sparse Spin-Labeling EPR Data Structure 16:181-95 (2008)

Aliferis CF, Statnikov A, Tsamardinos I, Mani S, Koutsoukos X.
Local Causal and Markov Blanket Induction Algorithms for Causal Discovery and Feature Selection for Classification. Part I: Algorithms and Empirical Evaluation. Accepted to the Journal of Machine Learning Research (2008).

Aliferis CF, Statnikov A, Tsamardinos I, Mani S, Koutsoukos X.
Local Causal and Markov Blanket Induction Algorithms for Causal Discovery and Feature Selection for Classification. Part II: Analysis and Extensions. Accepted to the Journal of Machine Learning Research,(2008).

O. A. Amusan, P. R. Fleming, B. L. Bhuva, L. W. Massengill, A. Balasubramanian, M. C. Casey, S. A. Nation, M. J. Gadlage, T. D. Loveless, A. F. Witulski, D. McMorrow, J. S. Melinger, and F. Barsun,
Laser verification of on-chip charge collection measurement circuit,Accepted for publication in IEEE Trans. Nucl. Sci.

O. A. Amusan, A. L. Sternberg, A. F. Witulski, B. L. Bhuva, J. D. Black, M. P. Baze, and L. W. Massengill,
Single event upsets in deep-submicron technologies due to charge sharing, Accepted for publication in IEEE Trans. Device and Materials Reliability. Currently available online.

Jose Apesteguia, Miguel A. Ballester and Rosa Ferrer
On the justice of decision rules, under review.

Arnett, D. R., Jennings, J., Tabb, D. L., Link, A. J., Weil, P. A.
A proteomic analysis of yeast Mot1pprotein-protein associations: insights into mechanism. Mol. Cell. Proteomics7:2090-2106 (2008)

A. Balasubramanian, O. A. Amusan, B. L. Bhuva, R. A. Reed, A. L. Sternberg, L. W. Massengill, D. McMorrow, and J. S. Melinger,
Measurement and analysis of interconnect crosstalk due to single events in a 90 nm CMOS technology, Accepted for publication for IEEE Trans. Nucl. Sci.

A. Balasubramanian, B. L. Bhuva, L. W. Massengill, B. Narasimham, and W. T. Holman,
A built-in self-test (BIST) technique for hardness assurance against SETs in digital circuits,Accepted for publication in IEEE Trans. Nucl. Sci.

A. Balasubramanian, B. Narasimham, B. L. Bhuva, L. W. Massengill, P. H. Eaton, M. Sibley, and D. G. Mavis,
mplications of total dose on single-event transient (SET) propagation,Accepted for publication in IEEE Trans. Nucl. Sci.

A. Balasubramanian, D. McMorrow, S. A. Nation, B. L. Bhuva, R. A. Reed, L. W. Massengill, T. D. Loveless, O. A. Amusan, J. D. Black, J. S. Melinger, M. P. Base, V. Ferlet-Cavrois, M. Gaillardin, and J. R. Schwank,
Pulsed laser single-event effects in highly scaled CMOS technologies in the presence of dense metal coverage,Accepted for publication in IEEE Trans. Nucl. Sci.

P. Bisegna, G. Caruso, D. Andreucci, L. Shen, V.V. Gurevich, H. E. Hamm, and E. DiBenedetto
Diffusion of the Second Messengers in the Cytoplasm Acts as a Variability Suppressor of the Single Photon Response in Vertebrate Phototransduction Biophys. J. 94(9):3363 (2008)

A. Bulusu and D.G. Walker
One-dimensional thin-film phonon transport with generation, Microelectronics Journal 39(7):950-956 (2008)

A. Bulusu and D. G. Walker
Quantum Modeling of Thermoelectric Properties of Si/Ge/Si Superlattices, IEEE Transactions on Electron Devices 55(1):423-429 (2008)

M. C. Casey, O. A. Amusan, A. Balasubramanian, B. L. Bhuva, M. L. Alles, L. W. Massengill, B. Narasimham, S. A. Nation, D. McMorrow, and J. S. Melinger,
Single-event effects on combinational logic circuits operating at ultra-low power, Accepted for publication in IEEE Trans. Nucl. Sci.

M. C. Casey, B. L. Bhuva, W. H. Robinson, L. W. Massengill, and A. R. Duncan,
Simulation Study on the Effect of Multiple Node Charge Collection on Error Cross-Section in CMOS Sequential Logic, Accepted for publication in IEEE Trans. Nucl. Sci.

Chen S, Lin F, Shin ME, Wang F, Shen L, Hamm HE.
RACK1 regulates directional cell migration by acting on G betagamma at the interface with its effectors PLC beta and PI3K gamma. Mol Biol Cell. 19(9):3909-22.(2008)

G. X. Ding and C. W. Coffey.
Radiation dose from kilovoltage cone-beam CT in an image-guided radiotherapy procedure. Int J Radiat Oncol Biol Phys In press.(2008)

G. X. Ding, D. M. Duggan, and C. W. Coffey
Accurate patient dosimetry of kilovoltage cone-beam CT in radiation therapy, Med Phys 35:1135-44 (2008)

G. X. Ding, D. M. Duggan, and C. W. Coffey
A theoretical approach for non-equilibrium radiation dosimetry, Phys Med Biol,53:3493-3499 (2008)

G. X. Ding, J.M. Pawlowski, and C. W. Coffey
A correction based dose calculation algorithm for kilovoltage x-rays.Med Phys 35:5312-5316 (2008)

Dong, E.; Smith, J.; Heinze, S.; Alexander, N.; Meiler, J.
BCL::Align-Sequence alignment and fold recognition with a custom scoring function online, Gene (2008)

Luca Flabbi and Andrea Moro
The Effect of Job Flexibility on Women Labor Market Outcomes: Estimates from a Search and Bargaining Model (2008)

Gibbons, J. G., and A. Rokas
Comparative and Functional Characterization of Intragenic Tandem Repeats in Ten Aspergillus Genomes. Molecular Biology and Evolution in press.

Hanson, S. M.; Dawson, E. S.; Francis, D. J.; Van Eps, N.; Klug, C. S.; Hubbell, W. L.; Meiler, J.; Gurevich, V. V.
A model for the solution structure of the rod arrestin tetramer, Structure,16:924-34 (2008)

Kang, C.; Tian, C.; Sonnichsen, F. D.; Smith, J. A.; Meiler, J.; George, A. L., Jr.; Vanoye, C. G.; Kim, H. J.; Sanders, C. R.
Structure of KCNE1 and implications for how it modulates the KCNQ1 potassium channel, Biochemistry 47:7999-8006 (2008)

Kaufmann, K. W.; Dawson, E. S.; Henry, L. K.; Field, J. R.; Blakely, R. D.; Meiler, J.
Structural determinants of species-selective substrate recognition in human and Drosophila serotonin transporters revealed through computational docking studies ,Proteins (2008).

Kendall A, McDonald M, Bian W, Bowles T, Baumgarten SC, Shi J, Stewart PL, Bullitt E, Gore D, Irving TC, Havens WM, Ghabrial SA, Wall JS, Stubbs G..
Structure of flexible filamentous plant viruses. J. Virology 82:9546-9554 (2008)

Xenofon Koutsoukos and Derek Riley
Computational Methods for Verification of Stochastic Hybrid Systems. IEEE Transactions on Systems, Man and Cybernetics, Part A. 38(2):385-396 (2008)

Lee SL, Murdock DG, McCauley JL, Bradford Y, Crunk A, McFarland L, Jiang L, Wang T, Schnetz-Boutaud N, Haines JL.
A Genome-wide Scan in an Amish Pedigree with Parkinsonism. Ann Hum Genet. 2008 May 26 [Epub ahead of print].

Lee YT, Dimitrova YN, Schneider G, Ridenour WB, Bhattacharya S, Soss SE, Caprioli RM, Filipek A, Chazin WJ.
Structure of the S100A6 complex with a fragment from the C-terminal domain of Siah-1 interacting protein: a novel mode for S100 protein target recognition. Biochemistry. 47(41):10921-32 (2008)

C. Li, M. Li, E.M. Lange, and R.M. Watanabe
Prioritized Subset Analysis: Improving Power in Genome-wide Association Studies, Human Heredity,65:129-141 (2008)

T. D. Loveless, L. W. Massengill, B. L. Bhuva, and W. T. Holman,
A radiation-hardened-by-design voltage-controlled-oscillator for mixed-signal phase-locked loops, Accepted for publication in IEEE Trans. Nucl. Sci.

E.J. Montes, R.A. Reed, J.A. Pellish, M.L. Alles, R.D. Schrimpf, R.A. Weller, M. Varadharajaperumal,G. Niu, A.K. Sutton, R. Diestelhorst, G. Espinel, R.Krithivasan, J.P. Comeau, J.D. Cressler, P.W Marshall, and G.Vizkelethy
Single Event Usept Mechanisms for Low-Energy-deposition Events in SiGe HBTs. IEEE Transactions on Nuclear Science,55:1581-1587 (2008)

B. Narasimham, O. A. Amusan, B. L. Bhuva, and R. D. Schrimpf,
Extended SET pulses in sequential circuits leading to increased SE vulnerability,Accepted for publication in IEEE Trans. Nucl. Sci.

B. Narasimham, M. Gadlage, B. L. Bhuva, R. D. Schrimpf, L. W. Massengill, W. T. Holman, A. F. Witulski, and K. F. Galloway,
est circuit for measuring pulse widths of single-event transients causing soft errors,Accepted for publication in IEEE Trans. Semiconductor Manufacturing.

B. Narasimham, R. L. Shuler, B. L. Bhuva, J. Gambles, and L. W. Massengill,
Quantifying the effect of guard rings and guard drains in mitigating charge collection and charge spread, Accepted for publication in IEEE Trans. Nucl. Sci.

B. D. Olson, W. T. Holman, L. W. Massengill, and B. L. Bhuva,
Frequency domain analysis of single event hardening techniques for analog-to-digital converters,Accepted for publication in IEEE Trans. Nucl. Sci.

B. D. Olson, W. T. Holman, L. W. Massengill, and B. L. Bhuva,
ingle-event effect mitigation in switched-capacitor comparator designs, Accepted for publication in IEEE Trans. Nucl. Sci.

Osipovich, A. B., Jennings, J.L., Lin, Q., Link, A. J., Ruley, H. E.
Dyggve-Melchior-Clausen Syndrome: chondrodysplasia resulting from defects in intracellular vesicle traffic. PNAS. 105:16,171-16,176 (2008)

Pattanayek R, Williams DR, Pattanayek S, Mori T, Johnson CH, Stewart PL, Egli M.
Three-dimensional model of the cyanobacterial circadian clock KaiB-KaiC protein complex and proposed mechanisms for modulation of the KaiC phosphorylation status. EMBO J. 27:1767-1778 (2008)

Derek Riley, Xenofon Koutsoukos, and Kasandra Riley
Modeling and Analysis of the Sugar Cataract Development Process Using Stochastic Hybrid Systems . IET Systems Biology in press.

N.A. Roberts, D. Li, D.G. Walker
Molecular dynamics simulation of thermal conductivity of nanocrystalline composite films, International Journal of Heat and Mass Transfer,in press

Rokas, A.
The effect of domestication on the fungal proteome. Trends in Genetics (Genome Analysis section): in press.

Rokas, A., and S. B. Carroll
Frequent and widespread parallel evolution of protein sequences. Molecular Biology and Evolution 25:1943-1953. (2008)

T. Roy, B. L. Bhuva, S. DasGupta, A. F. Witulski, M. L. Alles, and L. W. Massengill,
A comparison of single-event mechanisms in dual-well and triple-well 90 nm CMOS devices,Accepted for publication in IEEE Trans. Nucl. Sci.

Ryckman KK, Jiang L, Li C, Bartlett J, Haines JL, Williams SM
A prevalence-based association test for case-control studies Genet Epidemiol 32(7):600-605 (2008)

Lixin Shen, Paolo Bisegna, Giovanni Caruso, Daniele Andreucci, Vsevolod V Gurevich, Heidi E. Hamm, and Emmanuele DiBenedetto.
Kinetics of Rhodopsin Deactivation and Its Role in Regulating Recovery and Reproducibility in Mouse Photoresponse. Submitted

Lixin Shen, Giovanni Caruso, Paolo Bisegna, Daniele Andreucci, Vsevolod V Gurevich, Heidi E. Hamm, and Emmanuele DiBenedetto.
Dynamics of Mouse Rod Phototransduction and Its Sensitivity to Variation of Key Parameters. Submitted

Shi J, Williams DR, Stewart PL.
Script Assisted Microscopy (SAM) improves data acquisition rates. J. Struct. Biol. 164:166-169 (2008)(

Stassun, K.G., Mathieu, R.D., Cargile, P.A., Aarnio, A.N., Stempels, E., & Geller, A.
Surprising dissimilarities in a newly formed pair of 'identical twin' stars,Nature, 453:1079-1082 (2008)

M.A. Stremler
Fluid Mixing, Chaotic Advection, and Microarray Analysis, CISM Courses & Lectures, L. Cortelezzi & I. Mezic, eds., Springer-Wein (2008)

Thornton-Wells TA, Moore JH, Martin ER, Pericak-Vance MA, Haines JL.
Confronting complexity in late-onset Alzheimer's disease: application of two-stage analysis approach addressing heterogeneity and epistasis. Genet Epidemiol. 32(3):187-203 (2008)

Williams DR, Lee KJ, Shi J, Chen DJ, Stewart PL
Cryo-EM structure of the DNA-Dependent Protein Kinase Catalytic Subunit at subnanometer resolution reveals alpha-helices and insight into DNA binding, Structure,16:468-477 (2008)

Xiao-Hong Wen, Lixin Shen, Richard S. Brush, Norman Michaud, Muayyad R. Al-Ubaidi, Vsevolod V. Gurevich, Heidi E. Hamm, Janis Lem, Emmanuele DiBenedetto, Robert E. Anderson, and Clint L. Makino. Over-expression of Rhodopsin Alters the Structure and Photoresponse of Rod Photoreceptors. Biophysical Journal. 96(2) (2008)

Yang. Z., Browning, C. F., Hallaq, H., Yermalitskaya, L., Esker, J., Hall, M. R., Link, A. J., Ham, A. L., McGrath, M. J., Mitchell, C. A., Murray, K. T.
Four and a Half LIM Protein 1: A Partner for KCNA5 in Human Atrium. Cardiovasc. Res. 78:449-458.(2008)

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