Liang X, Trentham-Dietz A, Titus-Ernstoff L, Newcomb PA, Welch RA, Hutchinson AA, Hampton JM, Sutcliffe CB, Haines JL, Egan KM.
Whole-genome amplification of oral rinse self-collected DNA in a population-based case-control study of breast cancer. Cancer Epidemiol Biomarkers Prev. 16(8):1610-4. (2007)

The International Multiple Sclerosis Genetics Consortium. Hafler DA, Compston A, Sawcer S, Lander ES, Daly MJ, DeJager PL, deBakker PI, Gabriel SB, Mirel DB, Ivinson AJ, Pericak-Vance MA, Gregory SG, Rioux JD, McCauley JL, Haines JL, Barcellos LF, Cree B, Oksenberg JR, Hauser SL.
Risk Alleles for Multiple Sclerosis Identified by a Genomewide Study. N Engl J Med.357(9):851-62 (2007)

G. X. Ding, D. M. Duggan, B. Lu, D. E. Hallahan, A. Cmelak, A. Malcolm, J. Newton, M. Deeley, and C. W. Coffey,
Impact of inhomogeneity corrections on dose coverage in the treatment of lung cancer using stereotactic body radiation therapy, Med. Phys. , 34:2985-2994 (2007)

G. X. Ding, D. M. Duggan, and C. Coffey
Comment on: "Testing of the analytical anisotropic algorithm for photon dose calculation,[Med. Phys., 33: 4130-48, 2006.]," Med Phys, i 34(8):3414-14 (2007)

Venkov, C. D, Link, A. J., Jennings, J. L., Plieth, D., Inoue, Nagai, K., Xu, C., Dimitrova, Y. N., Rauscher III, F. J., Neilson, E. G.
A new proximal activator of transcription in epithelial-mesenchymal transition. J. Clin. Invest. 117:482-491 (2007)

Mori T, Williams DR, Byrne M, Qin X, Egli M, Mchaourab HS, Stewart PL, Johnson CH.
Elucidating the ticking of an in vitro circadian clockwork, PLoS Biology 5:e93 (2007)

Smith, J. A.; Vanoye, C. G.; Jr, A. L.; Meiler, J.; Sanders, C. R.
Structural Models for the KCNQ1 Voltage-Gated Potassium Channel, Biochemistry (2007)

McKinney, B. A.; Kallewaard, N. L.; Crowe, J. E., Jr.; Meiler, J. Using the natural evolution of a rotavirus-specific human monoclonal antibody to predict the complex topography of a viral antigenic site Immunome Res 3, 8 (2007)

. Henry, L. K.; Meiler, J.; Blakely, R. D.
Bound to Be Different: Neurotransmitter Transporters Meet Their Bacterial Cousins, Mol. Interv.,7:306-309 (2007)

Field, J. R.; Kaufmann, K. W.; Meiler, J.; Blakely, R. D.
Model-guided exploration of the serotonin transporter: Evaluation of residues engaged in substrate binding and selectivity, Journal of Neurochemistry , 102:45-45 (2007)

Schall JD, Boucher L
Executive control of gaze by the frontal lobes. Cogn Affect Behav Neurosci 7(4):396-412 (2007) A. Xu, D. Li, Y. Leng, and Y. Chen
Molecular Dynamics Simulation of Ion Distribution in Nanochannels, Molecular Simulation,33(12):959-963 (2007)

Y.A. Yi, C. Li, Miller C and A.L. George, Jr.
Strategy for encoding and comparison of gene expression signatures, Genome Biol, 8(7):R133 (2007)

R.A. Weller, R.D. Schrimpf, R.A. Reed, A.L. Sternberg, A.S. Kobayashi, M.H. Mendenhall, L.W. Massengill, and D.M. Fleetwood
Modeling Semiconductor Device Response using Detailed Radiation Event Simulations, J. Rad. Effects: Research and Engineering, 23(1):129-137 (2007)

L. Vlcek, Z. Zhang, M.L. Machesky, P. Fenter, J. Rosenqvist, D.J. Wesolowski, L.M. Anovitz, and P.T. Cummings
Electric Double Layer at Metal Oxide Surfaces: Static Properties of the Cassiterite - Water Interface, Langmuir, 23(9):4925-4937 (2007)

G. Vizkelethy, R.A. Reed, P.W. Marshall, and J.A. Pellish
Ion beam induced charge (IBIC) studies of silicon-germanium heterojunction bipolar transistors (HBTs), Nucl. Instr. And Meth. B, 260(1):264-269 (2007)

D.R. Velez, B. White, A.A. Motsinger, W.S. Bush, M.D. Ritchie, S.M. Williams, and J.H. Moore
A Balanced Accuracy Metric for Epistasis Modeling in Imbalanced Datasets using Multifactor Dimensionality Reduction, Genetic Epidemiology, 4:306-315 (2007)

A. Striolo, C. McCabe, P.T. Cummings, E.R. Chan, and S.C. Glotzer
Aggregation of POSS monomers in Liquid Hexane: A Molecular-simulation Study, Journal of Physical Chemistry B, 111(46):12248-12256 (2007)

R.D. Schrimpf, R.A. Weller, M.H. Mendenhall, R.A. Reed, and L.W. Massengill
Physical Mechanisms of Single Event Effects in Advanced Microelectronics, Nucl. Inst. Meth. B,261(1-2):1133-1136 (2007)

R.A. Reed, J.A. Pellish, R.A. Weller, M. Porter, J. Wilkinson, K.M. Warren, B. Sierawski, P.W. Marshall, and R.D. Schrimpf
Applications of Heavy Ion Microprobe for Single Event Effects Analysis, Nucl. Inst. Meth. B, 261(1-2):443-446 (2007)

Q. Pu, Y.S. Leng, L. Tsetseris, H. Park, S. Pantelides, and P. T. Cummings
Molecular dynamics simulations of stretched gold nanowires- the relative utility of different semi-empirical potentials, J. Chem. Phys , 126(14):144707 (2007)

C.M. Payne, X. Zhao, and P.T. Cummings
Molecular Simulation of DNA Transport in Solution, Molecular Simulation, 33(4-5):399-403 (2007)

S.D. Pathak, D.M. Dilts, and G.Biswas
On the evolutionary dynamics of supply network topologies. IEEE Transactions on Engineering Management, 54(4)

M'Koma AE, Blum DL, Norris JL, Koyama T, Billheimer D, Motley S, Ghiassi M, Ferdowsi N, Bhowmick I, Chang SS, Fowke JH, Caprioli RM, Bhowmick NA
Detection of pre-neoplastic and neoplastic prostate disease by MALDI profiling of urine, Biochem Biophys Res Commun, 353(3) :829-34 (2007)

E. Mamontov, L. Vlcek, D.J. Wesolowski, P.T. Cummings, W. Wang, L.M. Anovitz, J. Rosenqvist, C.M. Brown, and V.G. Sakai
Dynamics and structure of hydration water on rutile and cassiterite nanopowders studied by quasielastic neutron scattering and molecular dynamics simulations, Journal of Physical Chemistry B, 111(11):4328-4341 (2007)

H.C. Li, C.Y. Lee, C. McCabe, A. Striolo, and M. N Neurock
Evaluation of the Structural Properties of Alkane Silsesquioxanes Using Ab Initio Methods, Journal of Physical Chemistry A 111:3577-3584.

Y.S. Leng, P.J. Dyer, P.S. Krsti, R.J. Harrison, and P.T. Cummings
Calibration of chemical bonding between benzenedithiolate and gold: the effects of geometry and size of gold clusters, Molecular Physics, 105:293-300 (2007)

V.N. Koparde and P.T. Cummings
Molecular dynamics study of water adsorption on TiO₂ nanoparticles, J. Phys. Chem. C., 111(19):6920-6926 (2007)

V.N. Koparde and P.T. Cummings
A molecular dynamics simulation of adsorption of water molecules on anatase and rutile nanoparticles, J. Phys. Chem. C., p6920 (2007)

P. Hinow and E.M. Boczko
Molecular Seismology: An Inverse Problem in Nanobiology, J. Theor. Biol.,246(1):145-158 (2007)

Gerbasi, V. R. and Link, A. J.
The myotonic dystrophy type-2 gene ZNF9 promotes cap-independent translation,Mol Cell Proteomics,6(6):1049-1058 (2007)

G.X. Ding, D.M. Duggan, and C.W. Coffey
Characteristics of kilovoltage x-ray beam used for cone-beam computed tomography in radiation therapy. Phys Med Biol,52(6):1595-1615 (2007)

Friedman DB, Wang SE, Whitwell CW, Caprioli RM, Arteaga CL
Multivariable difference gel electrophoresis and mass spectrometry: a case study on transforming growth factor-beta and ERBB2 signaling, Mol Cell Proteomics, 6(1):150-69 (2007)

D.K. Chen, R.D. Schrimpf, D.M. Fleetwood, K.F. Galloway, S.T. Pantelides, A. Dimoulas, G. Mavrou, A. Sotiropoulos, and Y. Panayiotatos
Total Dose Response of Ge MOS Capacitors with HfO2/Dy2O3 Gate Stacks, IEEE Trans. Nucl. Sci., 54:971-974 (2007)

E.R. Chan, A. Striolo, C. McCabe, S.C. Glotzer, and P.T. Cummings
A Coarse-Grained Force Field for Simulating Polymer-Tethered Silsesquioxane Self-Assembly in Solution,Journal of Physical Chemistry B,127,114102 (2007)

C.R. Camalier, A. Gotler, A. Murthy, K.G. Thompson, G.D. Logan, T.J. Palmeri, and J.D. Schall
Dynamics of Saccade Target Selection: Race Model Analysis of Double Step and Search Step Saccade Production in Human and Macaque., Vision Re search.47(16):2187-211 (2007)

Boucher L, Palmeri TJ, Logan GD, Schall JD
Inhibitory control in mind and brain: an interactive race model of countermanding saccades. Psychol Rev. ,114(2):376-97 (2007)

Bozulic, L.D., Malik, M.T., Powell, D.W., Nanez, A., Link, A.J., , Ramos, K.S. and Dean, W.L.
Plasma membrane Ca2+-ATPase associates with the actin cytoskeleton via CLP36 in human platelets. Thromb. Haemostas.,87:587-97 (2007)

A. Bulusu and D.G. Walker
Modeling of thermoelectric properties of semiconductor thin films with quantum and scattering effects, Journal of Heat Tran sfer,129:4(2007)

A. Bulusu and D.G. Walker
Quantum modeling of thermoelectric performance of strained Si/Ge/Si superlattices using the nonequilibrium Green's function method, Journal of Applied Physics, 102(7):073713 (2007)

Cho, Y.-J.,, Jacob, J., Voehler, M., Kim, H.-Y., Kozekov, I., Harris, T.M., & Stone, M.P.
Stereochemistry Modulates the Stability of Reduced Interstrand Cross-Links Arising from R- and S--CH3--OH-1,N2-Propano-2'-deoxyguanosine in the 5'-CpG-3' DNA Sequence. Biochemistry 46: in press (2007)

C.H. Chung, S. Levy, P. Chaurand, and D.P. Carbone
Genomics and proteomics: emerging technologies in clinical cancer research>, Crit Rev Oncol Hematol, 61(1):1-25 (2007)

D. Riley, X. Koutsoukos, and K. Riley
Safety Analysis of Sugar Cataract Development Using Stochastic Hybrid Systems, Hybrid Systems: Computation and Control 2007, LNCS 4416:758- 761 (2007)

Elmquist, C.E., Wang, F., Stover, J.S., Stone, M.P., & Rizzo, C.J.
Site-specific Synthesis and Conformation of Oligonucleotides Containing the C8-Deoxyguanosine Adduct of the Dietary Mutagen 2-Amino-3-methylimidazo[4,5-f]qui noline (2007)

Kikuchi T, Carbone DP.
Proteomics analysis in lung cancer: challenges and opportunities, Respirology, 12(1):22-8, review article (2007)

Hughes, A. L., Powell, D. W., Bard, M., Eckstein, J., Barbuch, R., Link, A. J., Espenshade, P. J.
Dap1/PGRMC1 binds and regulates cytochrome P450 enzymes, Cell Metabolism, 5:143-149.

Lapierre LA, Avant KM, Caldwell CM, Ham AJ, Hill S, Williams JA, Smolka AJ, Goldenring JR.
Characterization of immunoisolated human gastric parietal cells tubulovesicles: identification of regulators of apical recycling, Am J Physiol Gastroi ntest Liver Physiol, in press (2007)

A.A. Motsinger, D. Brassat, S.C. Caillier, H.A. Erlich, K. Walker, L.L. Steiner, L. Barcellos, M.A. Pericak-Vance, S. Schmidt, S. Gregory, S.L. Hauser, J.L. Haines, J.R. Oksenberg, and M.D. Ritchie
Complex Gene-Gene Interactions in Multiple Sclerosis: A Multi-factorial Approach Reveals Associations with Inflammatory Genes, Neurogenetics, 8 :11-20 (2007).

M.D. Ritchie, A.A. Motsinger, W.S. Bush, C.S. Coffey, and J.H. Moore
Genetic Programming Neural Networks: A Powerful Bioinformatics Tool for Human Genetics, Applied Soft Computing, 7:471-479 (2007).

Tabb DL, Fernando CG, Chambers MC.
MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis, J Proteome Res, 6(2):654-61 (2007)

Tallman KA, Kim HY, Ji JX, Szapacs ME, Yin H, McIntosh TJ, Liebler DC, Porter NA.
Phospholipid-protein adducts of lipid peroxidation: synthesis and study of new biotinylated phosphatidylcholines, Chem Res Toxicol, 20(2):2 27-34 (2007)

K.M. Warren, B.D. Sierawski, R.A. Weller, R.A. Reed, M.H. Mendenhall, J.A. Pellish, R.D. Schrimpf, L.W. Massengill, M.E. Porter, and J.D. Wilkinson
Predicting Thermal Neutron Induced Soft Errors in Static Memories Using TCAD and Physics-Based Monte-Carlo SimulationTools, IEEE Electron Device Lette rs, 28:180-182 (2007)

J. Xu, M. Does, and J. Gore
Numerical study of water diffusion in biological tissues using an improved finite difference method, Phys. Med. Biol., 52:N111-N126 (2007).

Xu, W., Merritt, W.K., Nechev, L.V., Harris,T.M., Harris, C.M., Lloyd, R.S., & Stone, M .P.
Solution Structure of the 1,4-Bis(2'-Deoxyadenosin-N 6-yl)-2S,3S-butanediol Crosslinked Adduct Arising from B utadiene Diepoxide in the Human N-ras Codon 61 Sequence. Chem. Res. Toxicol. 20: in press (2007)

Yin H, Chacon A, Porter NA, Yin H, Masterson DS.
Free Radical-Induced Site-Specific Peptide Cleavage in the Gas Phase: Low-Energy Collision-Induced Dissociation in ESI- and MALDI Mass Spectrometry, J Am Soc Mass Spectrom, in press (2007)

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