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Dissecting trait heterogeneity: a comparison of three clustering methods applied to genotypic data. BMC Bioinformatics.
7(1):204 (2006)
A.M. Albadri, R.D. Schrimpf, K.D. Galloway, D.G. Walker
Single-event burnout in power diodes: mechanisms and models, Microelectronics Reliability, 46(2-4):317-325 (2006).
G. Anumanthan, S.K. Halder, D.B. Friedman, P.K. Datta
Oncogenic serine-threonine kinase receptor-associated protein modulates the function of Ewing sarcoma protein through a novel mechanism, Cancer Res, 66(22):10824-32 (2006)
O.A. Amusan, A.F. Witulski, L.W. Massengill, B.L. Bhuva, P.R. Fleming, M.L. Alles, A.L. Sternberg, J.D. Black, and R.D. Schrimpf
Charge Collection and Charge Sharing in a 130 nm CMOS Technology, IEEE Trans. Nucl. Sci., 53:3253-3258 (2006)
A. Balasubramanian, A.L. Sternberg, B.L. Bhuva, and L.W. Massengill
Crosstalk Effects Caused by Single Event Hits in Deep Sub-Micron CMOS Technologies, IEEE Trans. Nucl. Sci., 53:3306-3311 (2006)
M.P. Baze, J. Wert, J.W. Clement, M.G. Hubert, A. Witulski, O.A. Amusan, L. Massengill, and D. McMorrow
Propagating SET Characterization Technique for Digital CMOS Libraries, IEEE Trans. Nuclear Science, 53:3472-3478 (2006)
D. Brassat, Motsinger AA, Caillier SJ, Erlich HA, Walker K, Steiner LL, Cree BA, Barcellos LF, Pericak-Vance MA, Schmidt S, Gregory S, Hauser SL, Haines JL, Oksenberg JR, Ritchie M
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Multifactor dimensionality reduction reveals gene-gene interactions associated with multiple sclerosis susceptibility in African Americans, Genes Immu
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D. Brassat, A.A. Motsinger, K. Walker, L.L. Steiner, H.A. Erlich, L. Barcellos, M.A. Pericak-Vance, S.L. Hauser, J.L. Haines, J.R. Oksenberg, and M.D. Ritchie
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Brown, K.L., Iyer, R.S., Iyer, L.G., Deng, J.Z., Voehler, M. W., Stone, M.P., Harris, C.M., & Harris, T.M.
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t of Aflatoxin B1. J. Am. Chem. Soc. 128:15188-15199 (2006)
W.S. Bush, S.M. Dudek, and M.D. Ritchie
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Busler VJ, Torres VJ, McClain MS, Tirado O, Friedman DB, Cover TL
Protein-protein interactions among Helicobacter pylori cag proteins, J Bacteriol, 188(13):4787-800 (2006)
M.C. Casey, B.L. Bhuva, J.D. Black, L.W. Massengill, O.A. Amusan, and A.F. Witulski
Single-Event Tolerant Latch Using Cascode-Voltage Switch Logic Gates, IEEE Trans. Nucl. Sci., 53:3386-3391 (2006)
Cho, Y.-J., Jacob, J., Voehler, M., Kim, H.-Y., Kozekov, I., Harris, T.M., & Stone, M.P.
Orientation of the Crotonaldehyde-Derived N2-(3-oxo-1(S)-methyl-propyl)-dG DNA Adduct Hinders Interstrand Cross-Link Formation in the 5'-CpG-3' Sequence.
Chem. Res. Toxicol. 19:1019-1029 (2006)
Cho, Y.-J., Kim, H.-Y., Huang, H., Wang, H., Kozekov, I.D., Jacob, J., Voehler, M., Harris. T.M., Lloyd, R.S., Rizzo, C.J., and Stone, M.P.
Stereospecific Formation of Interstrand Carbinolamine Crosslinks by R- and S-a-CH3-g-OH-1,N2-Propano-2'-deoxyguanosine Adducts in 5'-CpG-3' DNA Sequences
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Dennehy MK, Richards KA, Wernke GR, Shyr Y, Liebler DC.
Cytosolic and nuclear protein targets of thiol-reactive electrophiles, Chem Res Toxicol, 19(1):20-9 (2006)
Fleischer, T. C., Weaver, C. M., McAfee, K. J., Jennings, J. L., Link, A. J.
Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic translation complexes, Genes and Dev.,
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Friedman DB, Stauff DL, Pishchany G, Whitwell CW, Torres VJ, Skaar EP.
Staphylococcus aureus redirects central metabolism to increase iron availability, PLoS Pathog, 2(8):e87 (2006)
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The Role of the Sequence-Dependent Electrostatic Landscape in DNA Alkylation Pattern
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D.W. Hahs, McCauley JL, Crunk AE, McFarrland LL, Gaskell PC, Jiang L, Slifer SH, Vance JM, Scott WK, Welsh-Bohmer KA, Johnson SR, Jackson CE, Pericak-Vance MA, Haines JL
A genome-wide linkage analysis of dementia in the Amish, Am J Med Genet B Neuropsychiatr Genet, 141(2):160-6 (2006).
J.L. Haines, Schnetz-Boutaud N, Schmidt S, Scott WK, Agarwal A, Postel EA, Olson L, Kenealy SJ, Hauser M, Gilbert JR, Pericak-Vance MA
Functional candidate genes in age-related macular degeneration: significant association with VEGF, VLDLR, and LRP6, Invest Ophthal mol Vis Sci, <
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Holt GE, Schwartz HS, Caldwell RL.
Proteomic profiling in musculoskeletal oncology by MALDI mass spectrometry, Clin Orthop Relat Res, 450:105-10 (2006)
S.J. Kenealy, Herrel LA, Bradford Y, Schnetz-Boutaud N, Oksenberg JR, Hauser SL, Barcellos LF, Schmidt S, Gregory SG, Pericak-Vance MA, Haines JL
Examination of seven candidate regions for multiple sclerosis: strong evidence of linkage to chromosome 1q44, Genes Immun., 7(1):73-6 (2006
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X. Liang, Schnetz-Boutaud N, Kenealy SJ, Jiang L, Bartlett J, Lynch B, Gaskell PC, Gwirtsman H, McFarland L, Bembe ML, Bronson P, Gilbert JR, Martin ER, Pericak-Vance MA, Haines JL
Covariate analysis of late-onset Alzheimer disease refines the chromosome 12 locus, Mol Psychiatry, 11(3):280-5 (2006).
P.I. Lin, Martin ER, Bronson PG, Browning-Large C, Small GW, Schmechel DE, Welsh-Bohmer KA, Haines JL, Gilbert JR, Pericak-Vance MA
Exploring the association of glyceraldehyde-3-phosphate dehydrogenase gene and Alzheimer disease, Neurology, 67(1):64-8 (2006).
T.D. Loveless, L.W. Massengill, B.L. Bhuva, W.T. Holman, A.F. Witulski and Y. Boulghassoul
A Hardened-by-Design Technique for RF Digital Phase-Locked Loops, IEEE Trans. Nucl. Sci., 53:3432-3438 (2006)
McAfee, K. J., Duncan, D. T., Assink, M., Link, A. J.
Analyzing proteomes and protein function using graphical comparative analysis of tandem mass spectrometry results, Mol. Cell. Proteomics., 5:1497-1513.
J.L. McCauley, Hahs DW, Jiang L, Scott WK, Welsh-Bohmer KA, Jackson CE, Vance JM, Pericak-Vance MA, Haines JL
Combinatorial Mismatch Scan (CMS) for loci associated with dementia in the Amish, BMC Med Genet. 7(1):19 (2006).
A.A. Motsinger, M.D. Ritchie
The Effect of Alternative Cross-Validation Strategies on the Performance of Multifactor Dimensionality Reduction. Genetic Epidemiology, 30:546-555.
J.A. Pellish, R.A. Reed, R.D. Schrimpf, M.L. Alles, M. Varadharajaperumal, G. Niu, A.K. Sutton, R.M. Diestelhorst, G. Espinel, R. Krithivasan, J.P. Comeau, J.D. Cressler, G. Vizkel
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Substrate engineering concepts to mitigate charge collection in deep trench isolation tecnologies, IEEE Trans. Nucl. Sci., 53:3298-3305 (20
06)
Peng, R., Hawkins, I., Link, A. J., Patton, J. G.
The Splicing Factor PSF is part of a large complex that assembles in the absence of pre-mRNA and contains all 5 snRNPs, RNA Biology., 3:69-
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Powell, D. W., Merchant, M. L., Link, A. J.
Discovery of Regulatory Molecular Events and Biomarkers Using Two-Dimensional Capillary Chromatography and Mass Spectrometry, Expert Rev. Proteomics, 3:63-74.
R.A. Reed, R.A. Weller, R.D. Schrimpf, M.H. Mendenhall, K.M. Warren, and L.W. Massengill
Implications of Nuclear Reactions for Single Event Effects Test Methods and Analysis, IEEE Trans. Nucl. Sci., 53:3356-3362 (2006)
A.K. Sutton, A.P. Gnana Prakash, B. Jun, E. Zhao, M. Bellini, J.A. Pellish, R.M. Diestelhorst, M. Carts, A. Phan, R. Ladbury, J.D. Cressler, P.W. Marshall, C.J. Marshall, R.A. Reed
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An investigation of dose rate and source dependent effects in 200 GHz SiGe HBTs, IEEE Trans. Nucl. Sci., 53:3166-3174 (2006)
A.D. Tipton, J.A. Pellish, R.A. Reed, R.D. Schrimpf, R.A. Weller, M.H. Mendenhall, B. Sierawski, A.K. Sutton, R.M. Diestelhorst, G. Espinel, J.D. Cressler, P.W. Marshall, and G. Vi
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Multiple-Bit Upset in 130 nm CMOS Technology, IEEE Trans. Nucl. Sci., 53:3259-3264 (2006)
Venkov, C. D, Link, A. J., Jennings, J. L., Plieth, D., Inoue, Nagai, K., Xu, C., Dimitrova, Y. N., Rauscher III, F. J., Neilson, E. G.
A new proximal activator of transcription in epithelial-mesenchymal transition, J. Clin. Invest., 117:482-491.
Wilkins M.R., Appel R.D., Van Eyk J.E., Chung M.C., Gorg A., Hecker M., Huber L.A., Langen H., Link A.J., Paik Y.K., Patterson S.D., Pennington S.R., Rabilloud T., Simpson R.J., We
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Yoon, H.-J., Feoktistova, A., Jennings, J. L., Link, A. J., Gould, K. L.
Role of Hcn1 and its phosphorylation in fission yeast APC/C function, J. Biol. Chem., 281:32284-32293.
J.E. Cygler, E. Heath, G.X. Ding, and J. Seunjens
Monte Carlo Systems in pre-clinical and clinical treatment planning: Pitfalls and triumphs. Editors: B. Curran, J. Balter and I. Chetty,, ISBN: 10-93052
4-33-1, Medical Physics Publishing, Madison, WI (2006).
G.X. Ding, D.M. Duggan, C.W. Coffey, P. Shokrani, and J.E. Cygler
First Macro Monte Carlo based commercial dose calculation module for electron beam treatment planning - new issues for clinical consideration. Phys Me
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G.X. Ding, D.M. Duggan, and C.W. Coffey
Commissioning Stereotactic Radiosurgery Beams Using both Experimental and Theoretical Methods, Phys
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P.J.Dyer and P.T. Cummings
Hydrogen bonding and induced dipole moments in water: Predictions from the Gaussian charge polarizable model and Car-Parrinello molecular dynamics. J
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FOCUS Collaboration
New measurement of BR(D + → ρ 0μ+ν) / BR(D + → K∗0μ+ν) Branching Ratio, Phys. Lett. B 637:32-38 (2006).
[arXiv:hep-ex/0511022]. CITATION = HEP-EX 0511022
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Study of the Decay Asymmetry Parameter and CP Violation Parameter in the Lambda/c+ $\to$ Lambda pi+ Decay, Phys. Lett. B 634:1
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[arXiv:hep-ex/0509042]. CITATION = HEP-EX 0509042
FOCUS Collaboration
A Non-parametric Approach to the D+ $\to$ anti-K*0 mu+ nu Form Factors, Phys. Lett. B 633:183-189 (2006).
[arXiv:hep-ex/0509027]. CITATION = HEP-EX 0509027
D.W. Haas, D.E. Geraghty, J. Andersen, J. Mar, A.A. Motsinger, R.T. D'Aquila, D. Unutmaz, C.A. Benson, M.D. Ritchie, and A. Landay
Immunogenetics of CD4 Lymphocyte Recovery during Antiretroviral The
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E.M. Hadac, E.S. Dawson, J.W. Darrow, E.E. Sugg, T.P. Lybrand, and L.J. Miller
Novel Benzodiazepine Photoaffinity Probe Stereoselectively Labels a Site Deep w
ithin the Membrane-Spanning Domain of the Cholecystokinin Receptor. Journal of Medicinal Chemistry 49:850-863.
T.C. Ionescu, F. Qi, C. McCabe, A. Striolo, J. Kieffer, and P.T. Cummings
Evaluation of Force Fields for Molecular Simulation of Polyhedral Oligomeric S
ilsesquioxanes, Journal of Physical Chemistry B 110:2502-2510 (2006).
N.A. Lakomek, T Carlomagno, S. Becker, C. Griesinger, and J. Meiler
A thorough dynamic interpretation of residual dipolar couplings in ubiquitin, J Biomol NMR 34:101-115 (2006).
Y.S. Leng and P.T. Cummings
Shear dynamics of hydration layers . Journal of Chemical Physics, 1
25 #104701 (2006). Also selected for Virtual Journal of Nanoscale Science and Technology (2006 Sept).
Y.S. Leng and P.T. Cummings
Hydration structure of water confined between mica surfaces. Journal of Che
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E.R. Martin, M.D. Ritchie, S. Kang, L. Hahn, and J.H. Moore
A Novel Method to Identify Potential Interactions in Nuclear Families: The MDR-PDT.
Genetic Epidemiology 30(2):111-23 (2006).
B.A. McKinney, N. Barney, P.S. Crooke, J.E. Crowe Jr., and J.H. Moore
Hybrid Grammar-based Approach to Non
linear Dynamical System Identification from Biological Time Series, Physical Review E 73, 021912 (2006).
B.A. McKinney, D.M. Reif, M.T. Rock, K.N. Edwards, S.F. Kingsmore, J.H. Moore, and J.E. Crowe Jr.
Cytokine Expression Patterns Associated with Systemic Adverse Event
s following Smallpox Immunization. Journal of Infectious Disease 194(4):444-453 (2006).
J. Meiler and D. Baker
ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility, Proteins, 65:538-548 (2006).
R. Menon, D.R. Velez, H. Simhan, K. Ryckman, L. Jiang, P. Thorsen, I. Vogel, B. Jacobsson, S.M. Williams, and S.J. Fortunato
Multilocus Interactions at Maternal TNF-, IL-6 and IL-6R Genes Predict Spontaneous Preterm Labor in European-American Women, Am. Journ. Ob. Gyn.,
194:1616-1624 (2006).
A.A. Motsinger, S.M. Dudek, L.W. Hahn, and M.D. Ritchie
Comparison of Neural Network Optimization Approaches for Studies of Human Genetics. Lecture Notes
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A.A. Motsinger, S.L. Lee, G. Mellick, and M.D. Ritchie
Power of Genetic Programming Neural Networks for Detecting High-order Gene-gene Interactions in Association Studie
s of Human Disease and an Application in Parkinsonâ# Disease. BMC Bioinformatics, 7:39 (2006).
A.A. Motsinger, M.D. Ritchie, R.W. Shafer, G.K. Robbins, G.D. Morse, L. Labbe, G.R. Wilkinson, D.B. Clifford, R.T. D'Aquila, V.A. Johnson, V. De Gruttola, R.B. Pollard, T.C. Meriga
n, M.S. Hirsch, J.P. Donahue, R.B. Kim, and D.W. Haas
Multilocus Gene-Gene Interactions and Response to Efavirenz-Containing Regimens: An Adult AIDS Clinical Trials Group Study, Pharmacogenetics and Genom
ics, 16:837-845 (2006).
M.D. Ritchie, D.W. Haas, A.A. Motsinger, J.P. Donahue, H. Erdem, S. Raffanti, P. Rebiero, A.L. George, R.B. Kim, J.L. Haines, and T.R. Sterling
Drug Transporter and Metabolizing Enzyme Gene Variants and Non-Nucleoside Reverse Transcriptase Inhibitor Hepatotoxicity, Clinical Infectious Diseases
, 43:779-82 (2006).
R. Pattanayek, D.R. Williams, S. Pattanayek, Y. Xu, T. Mori, C.H. Johnson, P.L. Stewart, and M. Egli
Analysis of KaiA-KaiC Protein Interactions in the Cyanobacterial Circadian Clock using Hybrid Str
uctural Methods. EMBO J. 25:2017-2028 (2006).
P. Pouget, E.E. Emeric, M. Leslie, J.D. Schall
Dynamic relationship between spikes and field potentials in supplementary eye field of macaque monkeys during saccade countermanding. Abstract; Society f
or Neuroscience (2006).
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S.D. Saban, M. Silvestry, G.R. Nemerow, and P.L. Stewart Visualization of α-Helices in a 6-Ångstrom Resolution Cryoelectron Microscopy Structure of Adenovirus Allows Refinement of Capsid Protein Assignments. J. Virol. 80:12049-12059 (2006). (Cover article and JVI Spotlight article) |
H. Sanada, J. Yatabe, S. Midorikawa, S. Hashimoto, T. Watanabe, J.H. Moore, M.D. Ritchie, S.M. Williams, J.C. Pezzullo, G.M. Eisner, P.A. Jose, and R.A. Felder
Salt Sensitivity and G-protein-coupled Receptor Kinase Type 4 Polymorphisms. Clinical Chemistry, 52:352-60 (2006).
 |
J. Shi, H.A. Koteiche, H.S. Mchaourab, and P.L. Stewart Cryoelectron Microscopy and EPR Analysis of Engineered Symmetric and Polydisperse Hsp16.5 Assemblies Reveals Determinants of Polydispersity and Substrate Binding. J. Biol. Chem. 281:40420-40428 (2006). |
M.G. Stabin, T.E. Peterson, G.E. Holburn, and M.A. Emmons
Voxel-Based Mouse and Rat Models for Internal Dose Calculations. J. Nucl. Med. 47:655-659 (2006).
M.A. Stremler and B.A. Cola
A Maximum Entropy Approach to Optima l Mixing in a Pulsed Source-sink Flow. Physics of Fluids 18, 011701 (2006).
A. Striolo, C. McCabe, P.T. Cummings
Organic-Inorganic Telechelic Molecules: Solution Properties from Simulations. Journal of Chemical Physics, 125 #104904 (2006).
A. Striolo, A.A. Chialvo, K.E. Gubbins, P.T. Cummings
Simulated water adsorption in chemically heterogeneous carbon nanotubes. Jo urnal of Chemical Physics, 124 #074710 (2006).
T.A. Thornton-Wells, J.H. Moore, J.L. Haines
Comparison of Three Clustering Methods for Dissecting Trait Heterogeneity in Genotypic Data, BMC Bioinform atics 7:204 (2006).
Tsamardinos, L.E. Brown, C.F. Aliferis
The Max-Min Hill-Climbing Bayesian Network Structure Learning A lgorithm, Machine Learning, (2006).
Voehler. M., Collier, G., Young, J., Stone, M.P., & Germann, M.W.
Performance of Cryogenic Probes as a Function of Ionic Strength and Sample Tube Geometry. J. Magn. Reson. 183:102-109 (2006)
Wang, F., Elmquist, C.E., Stover, J.S., Rizzo, C.J., & Stone, M.P.
Base-Displaced Intercalated Structure of the Food Mutagen 2-Amino-3-methylimidazo[4,5-f]quinoline (IQ) in the Recognition Sequence of the NarI Restriction En zyme, a Hotspot for -2 bp Deletions. J. Am. Chem. Soc. 128:10085-10095 (2006)
Y.V. White, X. Lu, R. Pasternak, N.H. Tolk, A. Chatterjee, R.D. Schrimpf, D.M. Fleetwood, A. Ueda, and R. Mu
Studies of Charge Carrier Trapping a nd Recombination Processes in Si/SiO2/MgO Structures Using Second-harmonic Generation, Appl. Phys. Lett. 88, 062102, pp. 1-3 (2006).
Yarbrough WG, Slebos RJ, Liebler D.
Proteomics: clinical applications for head and neck squamous cell carcinoma, Head Neck, 28(6):549-58, review article (2006)
A. Zanghellini, L. Jiang, A.M. Wollacott, G. Cheng, J. Meiler, E.A. Althoff, D. Rothlisberger, and D. Baker
New algorithms and an in silico benchmark for computational enzyme design, Protein Sci 15:2785-2794 (2006).
PHENIX Collaboration (S.S. Adler et al.)
Azimuthal angle correlations for rapidity separated hadron pairs in d + Au Collisions at s(NN)**(1/2) = 200-GeV,, Phys.Rev.Lett, 96:222301(2006)< br />
PHENIX Collaboration (S.S. Adler et al.)
Nuclear effects on hadron production in d+Au and p+p collisions at s(NN)**(1/2) = 200-GeV,, Phys.Rev.C,74:024904 (2006)
PHENIX Collaboration (S.S. Adler et al.)
Improved measurement of double helicity asymmetry in inclusive midrapidity pi0 production for polarized p+p collisions at s**(1/2) = 200-GeV,, Phys.R ev.D,73:091102(2006)
PHENIX Collaboration (S.S. Adler et al.)
Common suppression pattern of eta and pi0 mesons at high transverse momentum in Au+Au collisions at S(NN)**(1/2) = 200-GeV,Phy.Rev.Lett.,96:202301 (2006).
PHENIX Collaboration (S.S. Adler et al.)
Nuclear modification of electron spectra and implications for heavy quark energy loss in Au+Au collisions at s(NN)**(1/2) - 200-GeV, Phys.Rev.Lett., 96:032301 (2006).
PHENIX Collaboration (S.S. Adler et al.)
Jet structure from dihadron correlations in d+Au collisions at s(NN)**(1/2) = 200-GeV,Phys.Rev.C, 73:054903 (2006).
PHENIX Collaboration (S.S. Adler et al.)
Measurement of identified pi0 and inclusive photon v(2) and implication to the direct photon production in s(NN)**1/2 = 200-GeV Au+Au collisions, Phy s.Rev.Lett.,96:032302 (2006).
PHENIX Collaboration (S.S. Adler et al.)
Single electrons from heavy flavor decays in p+p collisions at s**(1/2) = 200-GeV, Phys.Rev.Lett, 96:032001(2006).
PHENIX Collaboration (S.S. Adler et al.)
J/psi production and nuclear effects for d+Au and p+p collisions at s(NN)**(1/2) = 200-GeV, Phys.Rev.Lett, 96:012304(2006).
PHENIX Collaboration (S.S. Adler et al.)
Modifications to di-jet hadron pair correlations in Au+Au collisions at s(NN)**(1/2) = 200-GeV, Phys.Rev.Lett, 97:052301(2006).
