An, H., Morrell, J. L., Jennings, J. L., Link, A. J., Gould, K.L.
Requirements of Fission Yeast Septins for Complex Formation, Localization and Function, Mol. Biol. Cell., 15:5551-5564.

Chaurand P, Sanders ME, Jensen RA, Caprioli RM.
Proteomics in diagnostic pathology: profiling and imaging proteins directly in tissue sections, Am J Pathol, 165(4):1057-68, review article (2004)

Daikoku T, Tranguch S, Friedman DB, Das SK, Smith DF, Dey SK.
Proteomic analysis identifies immunophilin FK506 binding protein 4 (FKBP52) as a downstream target of Hoxa10 in the periimplantation mouse uterus, Mol Endocrinol, 19(3):683-97 (2004)

Friedman DB, Hill S, Keller JW, Merchant NB, Levy SE, Coffey RJ, Caprioli RM.
Proteome analysis of human colon cancer by two-dimensional difference gel electrophoresis and mass spectrometry, Proteomics, 4(3):793-811 ( 2004)

Gerbasi, V. R., Weaver, C. M., Hill, S., Friedman, D. B., Link, A. J.
Yeast Asc1p and mammalian RACK1 are functionally orthologous core 40S ribosomal proteins that repress gene expression, Mol. Cell. Bio., 24: 8276-8287.

Gould, K. L., Ren, L., Feoktistova, A. S., Jennings, J. L., Link, A. J.
Methods. Tandem affinity purification and identification of protein complex components, Methods, 33:239-244.

Hachey DL, Chaurand P.
Proteomics in reproductive medicine: the technology for separation and identification of proteins, J Reprod Immunol, 63(1):61-73, review ar ticle (2004)

Hashim, M.F., Riggins, J.N., Schnetz-Boutaud, N., Voehler, M., Stone. M.P., & Marnett, L.J.
In Vitro Bypass of Malondialdehyde-Deoxyguanosine Ad ducts: Base Selection During Extension by the Klenow Fragment of DNA Polymerase I is the Critical Determinant of Replication Outcome. Biochemistry 43:11828-11835 (20 04)

S.J. Kenealy, Babron MC, Bradford Y, Schnetz-Boutaud N, Haines JL, Rimmler JB, Schmidt S, Pericak-Vance MA, Barcellos LF, Lincoln RR, Oksenberg JR, Hauser SL, Clane t M, Brassat D, Edan G, Yaouanq J, Semana G, Cournu-Rebeix I, Lyon-Caen O, Fontaine B
American-French Multiple Sclerosis Genetics Group. A second-ge neration genomic screen for multiple sclerosis, Am J Hum Genet, 75(6):1070-8 (2004).

Kobor, M. S., Venkatasubrahmanyam, S., Meneghini, M. D., Gin, J. W., Jennings, J. L., Link, A. J., Madhani, H. D., Rine, J.
A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin, PLoS Biology, 2: 587-599.

Lewis, P. W., Beall, E. L., Fleischer, T. C., Georlette, D., Link, A. J., Botchan, M. R.
Identification of a Drosophila Myb-E2F2/RBF complex that represses transcription, Genes and Dev., 18:2929-2940.

Link, A. J.
Complex Mixture Analysis, In The Encyclopedia of Mass Spectrometry (M. L. Gross and R. Caprioli, eds), Elsevier Science, New York. Volume 2, pg 27 4-289.

J.L. McCauley, L.M. Olson, M. Dowd, T. Amin, A. Steele, R.D. Blakely, S.E. Folstein, J.L. Haines, and J.S. Sutcliffe
Linkage and Association Analysis at the Serotonin Transporter (SLC6A4) Locus in a Rigid-Compulsive Subset of Autism, American Journal of Medical Genet ics Part B (Neuropsychiatric Genetics), 127B:104-112 (2004).

Merritt, W.K., Nechev, L.N., Scholdberg, T.A., Harris, C.M., Harris, T.M., Lloyd, R.S., & Stone, M.P.
Stereospecific Structural Perturbations Ar ising from Adenine N6 Butadiene Triol Adducts in Duplex DNA. Chem. Res. Toxicol. 17:1007-1019 (2004)

Morrell, J. L, Tomlin, G. C., Venkatram, S., Rajagopalan, S., Feoktistova, A. S., Tasto, J. J., Mehta, S., Jennings, J. L., Link, A. J., Balasubramanian, M. K., Gould, K. L.
Sid4p-Cdc11p assemble the septation initiation network and its regulators a the S. pombe SPB, Curr. Biol., 14:579-584.

Powell, D. W., Weaver, C. M., Jennings, J. L., Mcafee, K. J., He, Y., Weil, P. A., and Link, A. J.
Cluster analysis of mass spectrometry data reveals a novel component of SAGA, Mol. Cell. Bio., 24:7249-7259.

Reyzer ML, Caldwell RL, Dugger TC, Forbes JT, Ritter CA, Guix M, Arteaga CL, Caprioli RM
Early changes in protein expression detected by mass spectrometry predict tumor response to molecular therapeutics, Cancer Res, 64(24):9093 -100 (2004) Sattlegger, E., Swanson, M. J., Ashcraft, E. A., Jennings, J. L., Fekete, R. A., Link, A. J., Hinnebusch, A. G.
YIH1 is an actin-binding protein that inhibits protein kinase GCN2 and impairs general amino acid control when overexpressed, J. Biol. Chem., 2 79:29952-29962.

Venkatram, S., Tasto, J. J., Feoktistova, A. S., Jennings, J. L., Link, A. J., Gould K. L.
Identification and characterization of two novel proteins affecting fission yeast gamma-tubulin complex function, Mol. Biol. Cell, 15:2287- 2301.

H. D. Xiong, D. M. Fleetwood, and J. R. Schwank
Low-frequency Noise and Radiation Re sponse of Buried Oxides in SOI nMOS Transistors. IEE Proc. Circuits, Devices & Systems 151(2):118-124 (2004).

X. J. Zhou, L. Tsetseris, S. N. Rashkeev, D. M. Fleetwood, R. D. Schrimpf, S. T. Pantelides, J. A. Felix, E. P. Gusev, and C. D'Emic
Negative Bias-temperature Instabilit ies in MOS Devices with SiO2 and SiOxNy/HfO2 Gate Dielectrics. Appl. Phys. Lett. 84, (22) 4394-4396 (2004).

J. A. Felix, H. D. Xiong, D. M. Fleetwood, E. P. Gusev, R. D. Schrimpf, A. L. Sternberg, and C. D'Emic
Interface Trapping Properties of nMOSFETs with Al2O3/SiOxNy/Si (100) Gate Dielectric Stacks after Exposure to Ionizing Radiation. Microel ectron. Engrg. 72, 50-54 (2004).

J. A. Felix, J. R. Schwank, C. R. Cirba, R. D. Schrimpf, M. R. Shaneyfelt, D. M. Fleetwood, and P. E. Dodd
Influence of Total-dose Radiation on the Electrical Characteristics of SOI MOSFETs. Microelectron. Engrg. 72, 332-341 (2004).< br />
J. R. Schwank, D. M. Fleetwood, H. D. Xiong, M. R. Shaneyfelt, and B. L. Draper
Generation of Metastable Electron Traps in the Near Interfacial Region of SOI Buried Oxides by Ion Implantation and their Effect on Device Prope rties. Microelectron. Engrg. 72, 362-366 (2004).

Scholdberg, T.A., Nechev, L.N., Merritt, W.K., Harris, T.M., Harris, C.M., Lloyd, R.S., & Stone, M.P.
Structure of the Site-Specific Major Groov e (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2-deoxyadenosyl Adenine N6 Adduct of Butadiene Diol Epoxide. Chem. Res. Toxicol. 17:717-730 (2004).

X. Hu, B. K. Choi, H. J. Barnaby, D. M. Fleetwood, R. D. Schrimpf, S. C. Lee, S. Shojah-Ardalan, R. Wilkins, U. K. Mishra, and R. Dettmer
The Energy Dependence of Proton-Induced Degradation in AlGaN/Ga N High Electron Mobility Transistors. IEEE Trans. Nucl. Sci. 51, 293-297 (2004). [also in RADECS2002 Workshop Proc., pp. 17-20, 2002].

J. A. Felix, J. R. Schwank, D. M. Fleetwood, M. R. Shaneyfelt, and E. P. Gusev
Effects of Radiation and Charge Trapping on the Reliability of High-Rate Dielectrics. Microelectron. Reliab. 44(4):563-575 (200 4).

S. N. Rashkeev, D. M. Fleetwood, R. D. Schrimpf, and S. T. Pantelides
Hydrogen at the Si/SiO2 Interface: From Atomic-Scale Calculations to Engineering Models. in Radiation Effects and Soft Errors in Integrated Circuits and Electronic D evices, edited by R. D. Schrimpf and D. M. Fleetwood (World Scientific, Singapore, 2004), pp. 291-296.

J. Boch, F. Saigne, R. D. Schrimpf, D. M. Fleetwood, R. Cizmarik, and D. Zander
Elevated Temperature Irradiation at High dose Rate of Commerc ial Linear Bipolar ICs. IEEE Trans. Nucl. Sci. 51, 2903-2907 (2004).

J. Boch, F. Saigne, R. D. Schrimpf, D. M. Fleetwood, S. Ducret, L. Dusseau, J. P. David, J. Fesquet, J. Gasiot, and R. Ecoffet
Effect of Switching from High to Low Dose Rate on Linear Bipo lar Technology Radiation Response. IEEE Trans. Nucl. Sci. 51, 2896-2902 (2004).

B. Jun, M. Fouillat, R. D. Schrimpf, D. M. Fleetwood, and S. Cristoloveanu
Total Dose Radiation Effects in Partially-depleted SOI Transistors with Ultrathin Gate Oxide. Proceeedings IEEE SOI Conference, Charleston SC, October 4-7, 2004, pp. 30-31.

B. Jun, Y. V. White, R. D. Schrimpf, D. M. Fleetwood, F. Brunier, N. Bresson, S. Cristoloveanu, and N. H. Tolk
Characterization of Multiple Si/SiO2 Interfaces in Silicon-on-insulator Materials via Second-harmonic Generation. Appl. Phys. Lett. 85, (15) 3095-3097 (2004).

L. Tsetseris, X. J. Zhou, D. M. Fleetwood, R. D. Schrimpf, and S. T. Pantelides
Dual Role of Fluorine at the Si-SiO2 Interface. Appl. Phys. Lett. 85, (21) 4950-4952 (2004).

B. Jun, H. D. Xiong, A. L. Sternberg, C. R. Cirba, D. Chen, R. D. Schrimpf, D. M. Fleetwood, J. R. Schwank, and S. Cristoloveanu
Total Dose Effects on Double Gate Fully Depleted SOI MOSFETs . IEEE Trans. Nucl. Sci. 51, 3767-3772 (2004).

S. Ducret, F. Saigne, J. Boch, R. D. Schrimpf, D. M. Fleetwood, J. R. Vaille, L. Dusseau, J. P. David, and R. Ecoffet
Effect of Thermal Annealing on Radiation-induced Degradation of Bipolar Technologies when the Dose Rate is Switched from High to Low. IEEE Trans. Nucl. Sci. 51, 3219-3224 (2004).

J. Boch, F. Saigne, S. Ducret, R. D. Schrimpf, D. M. Fleetwood, P. Iacconi, and L. Dusseau
Total Dose Effects on Bipolar Integrated Circuits: Character ization of the Saturation Region. IEEE Trans. Nucl. Sci. 51, 3225-3230 (2004).

A. P. Karmarkar, B. Jun, D. M. Fleetwood, R. D. Schrimpf, R. A. Weller, B. D. White, L. J. Brillson, and U. K. Mishra
Proton Irradiation Effects on GaN-based High Electron Mobil ity Transistors with Si-doped AlxGa1-xN and Thick GaN Cap Layers. IEEE Trans. Nucl. Sci. 51, 3801-3806 (2004).

B. Jun, R. D. Schrimpf, D. M. Fleetwood, Y. V. White, R. Pasternak, S. N. Rashkeev, F. Brunier, N. Bresson, M. Fouillat, S. Cristoloveanu, and N. H. Tolk
Charge Trapping in Irradiated SOI Wafers Measured by Second Harmonic Generation. IEEE Trans. Nucl. Sci. 51, 3231-3237 (2004).

M. R. Shaneyfelt, J. R. Schwank, D. M. Fleetwood, R. L. Pease, J. A. Felix, P. E. Dodd, and M. C. Maher
Annealing Behavior of Linear Bipolar Devices with Enhanced Lo w-dose-rate Sensitivity. IEEE Trans. Nucl. Sci. 51, 3172-3177 (2004).

J. W. Stacey, R. D. Schrimpf, D. M. Fleetwood, and K. C. Holmes
Using Surface Charge Analysis to Characterize the Radiation Response of Si/SiO2 Structures. IEEE Trans. Nucl. Sci. 51, 3686-3691 (2004).

R. A. Weller, M. H. Mendenhall, and D. M. Fleetwood
A Screened Coulomb Scattering Module for Displacement Damage Computations in Geant4. IEEE Trans. Nucl. Sci. 51, 3669-3678 (2004).

J. A. Felix, M. R. Shaneyfelt, D. M. Fleetwood, J. R. Schwank, P. E. Dodd, E. P. Gusev, R. M. Fleming, and C. D'Emic
Charge Trapping and Annealing in High-rate Dielectrics. < i>IEEE Trans. Nucl. Sci. 51, 3143-3149 (2004).

H. D. Xiong, B. Jun, D. M. Fleetwood, R. D. Schrimpf, and J. R. Schwank
Charge Trapping and Low Frequency Noise in SOI Buried Oxides . IEEE Trans. Nucl. Sci. 51, 3238-3242 (2004).

S. N. Rashkeev, D. M. Fleetwood, R. D. Schrimpf, and S. T. Pantelides
Effects of Hydrogen Motion on Interface Trap Formation and An nealing. IEEE Trans. Nucl. Sci. 51, 3158-3165 (2004).

Kobayashi, A.S.; Sternberg, A.L.; Massengill, L.W.; Schrimpf, R.D.; Weller, R.A.
Spatial and Temporal Characteristics of Energy Deposition by Protons and Alpha Particles in Silicon. IEEE Trans. Nucl. Sci. 51, 3312-3317 (2004).

Boulghassoul, Y.; Adell, P.C.; Rowe, J.D.; Massengill, L.W.; Schrimpf, R.D.; Sternberg, A.L.
System-level Design Hardening Based on Worst-case ASET Simulat ions. IEEE Trans. Nucl. Sci. 51, 2787-2793 (2004).

Mikyas Y, Makabi M, Raval-Fernandes S, Harrington L, Kickhoefer VA, Rome LH, Stewart PL.
Cryoelectron Microscopy Imaging of Recombinant and Tissue Derived Vaults: Localization of the MVP N Termini and VPARP. J. Mol. Biol., 344:91-105 (2004). (Cover a rticle)

Williams SM, MD Ritchie, JA Phillips, E Dawson, M Prince, E Dzhura, A Willis, A Semenya, M Summar, BC White, JH Addy, J Kpodonu, L-J Wong, RA Felder, PA Jose, and JH Moore
Multilocus Analysis of Hypertension: a H ierarchical Approach. Human Heredity 57(1):28-38 (2004).

Harikumar HG, Pinion DI, Wessels WS, Dawson ES, Lybrand TP, Prendergast FG, and Miller LJ
Measurement of Intermolecular Distances for the Natural Agonist Peptide Docked at the Cholecyst okinin Receptor Expressed in situ Using Fluorescence Resonance Energy Transfer. Molecular Pharmacology 65(1):28-35 (2004).

Cho, Y.M., Ritchie, M.D., Moore, J.H., Moon, M.K., Lee, Y.Y, Yoon, K.H., Sung, Y.A., Lang, H.C., Park, J.Y., Lee, K.U., Shin, H.D., Kim, S.Y., Lee, H.K., Park, K.S.
Multifactor Dimensionality Reduction Reveals a Two-Locus Intera ction Associated with Type 2 Diabetes Mellitus. Diabetologia 47(3):549-554 (2004).

Tsai, C.T., Lai, L.P., Chiang, F.T., Fallin, D., Hwang, J.J., Ritchie, M.D., Moore, J.H., Hsu, K.L., Tseng, C.D., Liau, C.S., Lin, J.L., Tseng, Y.Z.
Renin-Angiotensin System Gene Polymorphisms and Atrial Fibrillation. Circulation 10 9:1640-1646 (2004).

Coffey, C.S., Hebert, P.R., Ritchie, M.D., Krumholz, H.M., Morgan, T.M., Gaziano, J.M., Ridker, P.M., and Moore, J.H.
An Application of Conditional Logistic Regression and Multifactor Dimensionality Reduction for Detecting Gene-gene Interactions on Risk of Myocardial Infarction: The Importance of Model Validation. BMC Bioinformatics, 5:49 (2004).

Ritchie, M.D., Coffey, C.S., and Moore J.H.
Genetic Programming Neural Networks: A Bioinformatics Tool for Human Genetics. Lecture Notes in Computer Science, 3102: 438-448 (2004).

Moore, J.H., Hahn, L.W., Ritchie, M.D., Thornton, T.A., White, B.
Routine Discovery of High-Order Epistasis Models for Computational Studies in Human Genetics. Applied Soft Computing 4:79-86 (2004).

A. Statnikov, C.F. Aliferis, and I. Tsamardinos
Methods for Multi-category Cancer Diagnosis from Gene Expression Data: A Comprehensive Evaluation to Inform Decision Support System Development. Medinfo, 2004.
Moore, J.H., Hahn, L.W.
Evaluation of a Discrete Dynamic Systems Approac h for Modeling the Hierarchical Relationship Between Genes, Biochemistry, and Disease Susceptibility. Discrete and Continuous Dynamical Systems: Series B 4(1):275-28 7 (2004).

Reif, D.M., White, B.C., Moore, J.H.
Integrated Analysis of Genetic, Genomic, and Proteomic data. Expert Revie w of Proteomics 1(1):67-75 (2004).

Aune, T.M., Parker, J.S., Maas, K., Olsen, N., Moore, J.H.
Co-localization of Differentially Expressed Genes and Shared Susceptibility Loci in Hum an Autoimmunity. Genetic Epidemiology 27(2):162-172 (2004).

Moore, J.H., Hahn, L.W.
An Improved Grammatical Evolution Strategy for Petri Net Modeling of Complex Genetic Systems. In Raidl, G.R., Cagnoni, S., Branke, J., Corne, D.W., Rolf, D., Jin, Y., Johnson, C., Machado, P., Marchiori, E., Rothlauf, F., Smith, G.D., Squillero, G. (eds), Lecture Notes in Computer Science 3005, 62-71, Springer-Verlag, Berlin (2004).

Moore, J.H., Hahn, L.W.
Systems Biology Modeling in Human Genetics Using Petri Nets and Grammatical Evolution. In Deb, K., Poli, R., Banzhaf, W., Beyer, H.-G., Burke, E., Darwen, P., Dasgupta, D., Floreano, D., Foster, J., Harman, M., Holland, O., Lanzi, P.L., Spector, L., Tettamanzi, A., Thierens, D., Tyrrell, A. (eds), Lecture Notes in Computer Science 3102, 392-4 01, Springer, New York (2004).

White, B.C., Moore, J.H.
Systems Biology Thought Experiments in Human Genetics Using Artificial Life and Grammatical Evolution. In Pollack, J., Bedau, M., Husbands, P., Ikegami, T., Watson, R.A. (eds), Artificial Life IX. The MIT Press, Cambridge, pp 581-86 (2004).

E687 Collaboration
On the Narrow Dip Structure at 1.9~GeV/$c^2$ in Diffractive Photoproduction. Phys. Lett. B 578:290-296 (2004).

FOCUS Collaboration
Study of Hadronic Five-Body Decays of Charmed Mesons Involving \KSH. Phys. Lett. B 586:191-197 (2004).

FOCUS Collaboration
Charm - Anticharm Baryon Production Asymmetries in Photon Nucleon Interactions. Phys. Lett. B 581:39-48 (2004).

FOCUS Collaboration
Dalitz Plot Analysis of \DsP\ and \DP\ Decay to \PIP\PIM\PIP\ Using the K-Matrix Formalism. Phys. Lett. B 585:200-212 (2004).
FOCUS Collaboration
Measurement of Masses and Widths of Excited Charm Mesons $D_2^*$ and Evidence for Broad States. Phys. Lett. B 586:11-20 (2004).

FOCUS Collaboration
New Measurements of the $\DsP \to \phi\MP\N$ Form Factor Ratios. Phys. Lett. B 586:183-190 (2004).

FOCUS Collaboration
Measurements of Six-Body Hadronic Decays of the \DZ\ Charmed Meson. Phys. Lett. B 586:21-26 (2004).

FOCUS Collaboration
Measurement of the Ratio of the Vector to Pseudoscalar Charm Semileptonic Decay Rate $\Gamma(\DP \to \overline{K}{}^{*{\tiny0}} \MP \NM)/\Gamma(\ DP \to \KZB \MP \NM)$. Phys. Lett. B 598:33-41 (2004).

FOCUS Collaboration
Study of the Doubly and Singly Cabibbo Suppressed Decays $\DP \to \KP\PIP\PIM$ and $\DsP \to \KP\PIP\PIM$. Phys. Lett. B 601:10 -19 (2004).

Schwartz SA, Weil RJ, Johnson MD, Toms SA, Caprioli RM.
Protein profiling in brain tumors using mass spectrometry: feasibility of a new technique for the analysis of protein expression, Clin Cancer Res, 10(3):981-7 (2004)

D.G. Walker and R.A. Weller
Phonon Production and Nonequilibrium Transport from Ion Strikes, IEEE Transactions on Nuclear Science 51(6):3318-3323 (2004).

D.G. Walker and T.S. Fisher
Simulation of field-emitted electron trajectories and transport from carbon nanotubes, Journal of Vacuum Science and Technology B, 22(3):11 01-1107 (2004) (Also published in Virtual Journal of Nanoscale Science and Technology Vol. 9, No. 21, 2004).

C.T. Harris, D.G. Walker, T.S. Fisher and W.H. Hofmeister
Experimental Characterization of Anode Heating due to Electron Field Emission, Microscale Thermophysical Engineering , 8(2):101-110 (2004).